2 posts tagged with transcriptionfactors.
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We have created a new method to find transcription factor motifs in ChIP-seq data using knockout controls. Available on PyPI and GitHub.
Our new method predicts transcription factor and chromatin factor locations in a cell type using new kinds of data like chromatin factor binding in other cell types and learning the association of gene expression patterns with chromatin factor binding patterns. We've made free software available and a track hub that can load our predictions for 36 chromatin factors in 33 human tissue types into the UCSC Genome Browser.