After five years, the NIH-funded ENCODE Project has unveiled its detailed study of the biochemical context of the human genome. Nature has a special web portal linking together 24 publications in Nature, a special issue of Genome Research, and Genome Biology (all open access). There's also an iPad app to help you navigate through the papers and results. You can look at an enormous poster of results, but it contains only a tiny fraction of the 15 TB of data from the project's >1,600 experiments. Perhaps aerial dance is a better way of portraying what we have learned about genome biology. [more inside]
BEDOPS is a suite of tools to address common questions raised in genomic studies, mostly with regard to overlap and proximity relationships between data sets. BEDOPS aims to be scalable, flexible and performant, facilitating the efficient and accurate analysis and management of large-scale genomic data.